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chore: update docker/build-push-action action to v7.4.0
#190seqeralabs-renovate[bot] opened Nov 2, 2026Bot1 task
chore: update dependency rust to 1.99
#189seqeralabs-renovate[bot] opened Nov 2, 2026Bot1 task
chore: update actions/setup-node action to v6.5.0
#188seqeralabs-renovate[bot] opened Nov 2, 2026Bot1 task
chore: update actions/checkout action to v6.1.0
#187seqeralabs-renovate[bot] opened Nov 2, 2026Bot1 task
chore: update swatinem/rust-cache action to v2.9.3
#186seqeralabs-renovate[bot] opened Nov 2, 2026Bot1 task
chore: update rust-lang/crates-io-auth-action action to v1.0.6
#185seqeralabs-renovate[bot] opened Nov 2, 2026Bot1 task
fix(rseqc): honor explicit infer-experiment sampling limits
#184NicoDeVeaux opened Nov 1, 2026
fix(preseq): record status for unestimable libraries
#183NicoDeVeaux opened Nov 1, 2026
chore: update actions/upload-artifact action to v7.0.2
#182seqeralabs-renovate[bot] opened Oct 26, 2026Bot1 task
chore: update actions/download-artifact action to v8.0.2
#181seqeralabs-renovate[bot] opened Oct 26, 2026Bot1 task
chore: update actions/deploy-pages action to v5.0.1
#180seqeralabs-renovate[bot] opened Oct 26, 2026Bot1 task
chore: update dtolnay/rust-toolchain digest to 683b588
#179seqeralabs-renovate[bot] opened Oct 26, 2026Bot1 task
fix(bam): prevent duplicate reads from indexed CRAM queries
#178NicoDeVeaux opened Oct 23, 2026
fix(bam): count unplaced reads once and handle empty CRAM sweeps
#177NicoDeVeaux opened Oct 23, 2026
fix(counting): distinguish chromosome mismatch from unassigned reads
#176NicoDeVeaux opened Oct 23, 2026
fix(flagstat): match samtools counts, alignment priority and percentages
#175NicoDeVeaux opened Oct 23, 2026
feat(coverage): bigWig tracks from the alignment pass
#166BenjaminDEMAILLE opened Aug 29, 2026
fix(deps): bump crossbeam-epoch for RUSTSEC-2026-0204
#165BenjaminDEMAILLE opened Aug 29, 2026
feat(rna): Picard CollectRnaSeqMetrics
#164BenjaminDEMAILLE opened Aug 29, 2026
feat(rna): RSeQC geneBody_coverage and read_GC
#161BenjaminDEMAILLE opened Aug 29, 2026
feat(reads): raw FASTQ quality control
#160BenjaminDEMAILLE opened Aug 29, 2026
feat(protein): mass spectrometry QC from mzML
#159BenjaminDEMAILLE opened Aug 28, 2026
feat(protein): add the protein subcommand and its sequence mode
#158BenjaminDEMAILLE opened Aug 28, 2026
feat(dna): Qualimap bamqc, plus the DNA documentation pages
#156BenjaminDEMAILLE opened Aug 28, 2026
feat(dna): targeted mode, CollectHsMetrics and CollectGcBiasMetrics
#155BenjaminDEMAILLE opened Aug 28, 2026

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