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build: bump the uv group across 8 directories with 14 updates #668

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55 changes: 7 additions & 48 deletions medcat-service/docs/uv.lock
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4 changes: 2 additions & 2 deletions medcat-service/requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
gunicorn==23.0.0
setuptools==78.1.1
setuptools==84.1.0
simplejson==3.19.3
setuptools-rust==1.11.0
medcat[meta-cat,spacy,deid]~=2.10.0
# pinned because of issues with de-id models and past models (it will not do any de-id)
transformers>=4.34.0,<5.0.0
transformers>=5.22.2,<6.0.0
requests==2.33.0
fastapi[standard]==0.136.3
pydantic>=2.11.10,<2.12.5
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49 changes: 4 additions & 45 deletions medcat-trainer/docs/uv.lock
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1,277 changes: 416 additions & 861 deletions medcat-trainer/webapp/uv.lock
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315 changes: 82 additions & 233 deletions medcat-tutorials/uv.lock
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321 changes: 85 additions & 236 deletions medcat/docs/uv.lock
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8 changes: 4 additions & 4 deletions medcat/pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -96,7 +96,7 @@ spacy = [
"spacy",
]
meta_cat = [
"transformers>=4.41.0,<5.0", # avoid major bump
"transformers>=4.41.0,<6.0", # avoid major bump
"peft>0.8.2,<1.0",
"torch>=2.4.0,<3.0",
"scikit-learn>=1.1.3,<2.0",
Expand All @@ -108,16 +108,16 @@ dict_ner = [
"pyahocorasick>=2.1.0,<3.0"
]
deid = [
"datasets>=2.2.2,<3.0.0",
"transformers>=4.41.0,<5.0", # avoid major bump
"datasets>=2.2.2,<6.0.0",
"transformers>=4.41.0,<6.0", # avoid major bump
"scikit-learn>=1.1.3,<2.0",
"torch>=2.4.0,<3.0",
# since 3.13 we need to use later version of scipy for it
"scipy<1.14; python_version < '3.13'",
"scipy>=1.14; python_version >= '3.13'",
]
rel_cat = [
"transformers>=4.41.0,<5.0", # avoid major bump
"transformers>=4.41.0,<6.0", # avoid major bump
"scikit-learn>=1.1.3,<2.0",
"torch>=2.4.0,<3.0",
]
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1,738 changes: 849 additions & 889 deletions medcat/uv.lock
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2 changes: 1 addition & 1 deletion v1/medcat-tutorials/requirements-dev.txt
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Expand Up @@ -4,7 +4,7 @@ seaborn~=0.11.2
pytest<9.1.0
pytest-xdist>=3.0,<4
nbmake<1.5
nbconvert<6
nbconvert<8
jinja2<=3.0
matplotlib>=3.4.0,<3.8.0
seaborn
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18 changes: 9 additions & 9 deletions v1/medcat/docs/requirements.txt
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Expand Up @@ -5,30 +5,30 @@ sphinx-autoapi~=3.0.0
MarkupSafe==3.0.2
accelerate==1.2.1
aiofiles==24.1.0
aiohttp==3.11.11
aiohttp==3.14.4
aiosignal==1.3.2
asttokens==3.0.0
async-timeout==5.0.1
attrs==24.3.0
backcall==0.2.0
blis==0.7.11
catalogue==2.0.10
certifi==2024.12.14
certifi==2026.10.18
charset-normalizer==3.4.1
click==8.1.8
comm==0.2.2
confection==0.1.5
cymem==2.0.10
darglint==1.8.1
datasets==2.21.0
datasets==5.0.1
decorator==5.1.1
dill==0.3.8
exceptiongroup==1.2.2
executing==2.1.0
filelock==3.16.0
filelock==4.2.1
flake8==7.0.0
frozenlist==1.5.0
fsspec==2024.6.1
fsspec==2026.6.0
gensim==4.3.3
huggingface-hub==0.30.2
idna==3.10
Expand All @@ -43,7 +43,7 @@ langcodes==3.5.0
matplotlib-inline==0.1.7
mccabe==0.7.0
mpmath==1.3.0
multidict==6.1.0
multidict==7.2.1
multiprocess==0.70.16
murmurhash==1.0.11
mypy==1.11.2
Expand Down Expand Up @@ -87,18 +87,18 @@ thinc==8.2.5
threadpoolctl==3.5.0
tokenizers==0.21.0
tomli==2.2.1
torch==2.5.1
torch==2.15.0
tqdm==4.67.1
traitlets==5.14.3
transformers==4.51.3
transformers==5.10.1
triton==3.1.0
typer==0.15.1
types-PyYAML==6.0.3
types-aiofiles==0.8.3
types-setuptools==57.4.10
typing-extensions==4.12.2
tzdata==2024.2
urllib3==2.3.0
urllib3==2.8.0
wasabi==1.1.3
wcwidth==0.2.13
widgetsnbextension==4.0.13
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