Install IWC tools for usegalaxy.cz

usegalaxy.cz/annotation.yml.lock

@@ -362,6 +362,7 @@ tools:
   - 9bc5cdefb090
   - 9cd341095afd
   - aff5135563c6
+  - b6236eb1a50b
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: socru
@@ -812,6 +813,7 @@ tools:
   owner: iuc
   revisions:
   - 1942e86e2ee1
+  - 25f3b474ca6f
   - 292eea8defa7
   - 728dacaf08a9
   - d77802fe76f7

usegalaxy.cz/assembly.yml.lock

@@ -221,6 +221,7 @@ tools:
   - 02a822e32de7
   - 14ddfc8ffb93
   - 7518ee87b53d
+  - 792acb18fb24
   - 98242353faa4
   - ab208c87d973
   - de387b2b2803
@@ -268,6 +269,7 @@ tools:
   - 1ce9b1d72ec3
   - 276f5d8712d5
   - 3ee0ef312022
+  - 53d3fd8fca8d
   - 643e0ff70be5
   - 8d4f03b5fe9d
   - cb8dfd28c16f
@@ -289,6 +291,7 @@ tools:
   - 81df4950d65b
   - 875d0f36d66f
   - a3b35edea53a
+  - baeffe7bfe47
   - cbc516cee202
   - ebb0dcdb621a
   tool_panel_section_id: assembly

usegalaxy.cz/convert_formats.yml.lock

@@ -160,6 +160,7 @@ tools:
 - name: biom_convert
   owner: iuc
   revisions:
+  - 081cc9a9a738
   - b3858ab7f598
   - d4d4e9febf5c
   - e177a8ea0bf1
@@ -177,6 +178,7 @@ tools:
   revisions:
   - 154d00cbbf2d
   - 3e436657dcd0
+  - 88fecd593368
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats
 - name: msms_extractor
@@ -201,6 +203,7 @@ tools:
   - 77f67ddd89d6
   - 7e2ee5f43778
   - ab55af10f1ff
+  - db7c0226ebd9
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats
 - name: graphicsmagick_image_convert

usegalaxy.cz/epigenetics.yml

@@ -42,3 +42,5 @@ tools:
   owner: lldelisle
 - name: hicup2juicer
   owner: bgruening
+- name: atacseqqc
+  owner: iuc

usegalaxy.cz/epigenetics.yml.lock

@@ -156,3 +156,9 @@ tools:
   - f8cb84c49623
   tool_panel_section_id: epigenetics
   tool_panel_section_label: Epigenetics
+- name: atacseqqc
+  owner: iuc
+  revisions:
+  - e03e488e03e0
+  tool_panel_section_id: epigenetics
+  tool_panel_section_label: Epigenetics

usegalaxy.cz/fasta_fastq.yml.lock

@@ -66,6 +66,7 @@ tools:
   revisions:
   - 297962e79f39
   - 4a3e93647a4e
+  - 5e0a8c02887c
   - ac3fed111eb6
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
@@ -94,6 +95,7 @@ tools:
   owner: devteam
   revisions:
   - '144275714590'
+  - 242f90a25c1d
   - 81a9090d6df3
   - ff7d49ec777f
   tool_panel_section_id: fasta_fastq
@@ -221,6 +223,7 @@ tools:
   owner: devteam
   revisions:
   - 516b97a23d7e
+  - 59a3ca730b16
   - 859422bcb689
   - e773f1eb16cf
   tool_panel_section_id: fasta_fastq
@@ -240,6 +243,7 @@ tools:
   - 2bd7cdbb6228
   - 53af7b5b1b56
   - 75a3b8da8e76
+  - 771554c05a0b
   - a60283899c6d
   - b9aaed85cbd1
   - d94aff5ee623
@@ -356,6 +360,7 @@ tools:
   - 8511b6d85fc7
   - a019807f4e67
   - a09586d5149a
+  - c8fb17965c7d
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: umi_tools_group
@@ -602,6 +607,7 @@ tools:
   - 24107542edff
   - 3d6d1121a427
   - 54a954ee64d4
+  - 812705bcf39c
   - a89d0059d1d7
   - b9297580f1e0
   - cfa0fe8978a3
@@ -675,6 +681,7 @@ tools:
   revisions:
   - 1ee282794de3
   - 654b3a274ed5
+  - dbd2e239117c
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: seqkit_translate

usegalaxy.cz/graph_display_data.yml.lock

@@ -68,6 +68,7 @@ tools:
   revisions:
   - 1483285bdb7a
   - a6e57ff585c0
+  - eb55da80c5e2
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
 - name: circos
@@ -132,6 +133,7 @@ tools:
 - name: taxonomy_krona_chart
   owner: crs4
   revisions:
+  - 01a54504b6aa
   - 1334cb4c6b68
   - 73486cc6170e
   - 7d01da0b9e18

usegalaxy.cz/join__subtract_and_group.yml.lock

@@ -16,6 +16,7 @@ tools:
   owner: iuc
   revisions:
   - 3ddd99c7efee
+  - 4b00d89e8690
   tool_panel_section_id: join__subtract_and_group
   tool_panel_section_label: Join, Subtract and Group
 - name: subtract

usegalaxy.cz/mapping.yml.lock

@@ -75,6 +75,7 @@ tools:
   revisions:
   - 53255f6eecfc
   - 55c9ac3aa8f4
+  - 6e8618432bea
   - 79de45b5069b
   - 980d2a2e1180
   - d8d32326fbfb
@@ -152,6 +153,7 @@ tools:
   revisions:
   - 1dfc975b48d5
   - 2477830927ec
+  - 2e9f2d3d1b39
   - 4a196b9c72c2
   - 64f11cf59c6e
   - c598cbb8b019

usegalaxy.cz/metagenomic_analysis.yml

@@ -378,3 +378,9 @@ tools:
   owner: iuc
 - name: phyloseq_tax_glom
   owner: iuc
+- name: kneaddata
+  owner: iuc
+- name: motus
+  owner: bgruening
+- name: samestr
+  owner: iuc

usegalaxy.cz/metagenomic_analysis.yml.lock

@@ -674,6 +674,7 @@ tools:
 - name: krakentools_extract_kraken_reads
   owner: iuc
   revisions:
+  - 04eb022d7409
   - 3b1963f729cb
   - 4bf1e2701504
   - f329328da134
@@ -1641,3 +1642,21 @@ tools:
   - bcc827195b65
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
+- name: kneaddata
+  owner: iuc
+  revisions:
+  - 10f8abc1fbdf
+  tool_panel_section_id: metagenomic_analysis
+  tool_panel_section_label: Metagenomic Analysis
+- name: motus
+  owner: bgruening
+  revisions:
+  - b2b7a3897ef6
+  tool_panel_section_id: metagenomic_analysis
+  tool_panel_section_label: Metagenomic Analysis
+- name: samestr
+  owner: iuc
+  revisions:
+  - 66378faa1313
+  tool_panel_section_id: metagenomic_analysis
+  tool_panel_section_label: Metagenomic Analysis

usegalaxy.cz/ncbi_blast.yml.lock

@@ -14,6 +14,7 @@ tools:
   - 6560192c5098
   - 6f386c5dc4fb
   - 70e7dcbf6573
+  - 71a9b71a2fa1
   - 7538e2bfcd41
   - 7f3c448e119b
   - 9dabbfd73c8a

usegalaxy.cz/peak_calling.yml.lock

@@ -38,6 +38,7 @@ tools:
   revisions:
   - 640d3af5d833
   - 86e2413cf3f8
+  - d8362a868940
   tool_panel_section_id: peak_calling
   tool_panel_section_label: Peak Calling
 - name: peakachu

usegalaxy.cz/picard.yml.lock

@@ -10,6 +10,7 @@ tools:
   - 3f254c5ced1d
   - 585027e65f3b
   - 881d7645d1bf
+  - 933d5b76e8e8
   - a1f0b3f4b781
   - b502c227b5e6
   - bdd173c2d3e3

usegalaxy.cz/quality_control.yml.lock

@@ -15,6 +15,7 @@ tools:
   - 5e33b465d8d5
   - 75c93c70d094
   - 862943c10425
+  - 94b6bea727ae
   - 97255f6fdf7e
   - 9a913cdee30e
   - a7e081ceb76a

usegalaxy.cz/rna_analysis.yml.lock

@@ -582,6 +582,7 @@ tools:
   - 2e6190c29c54
   - 473382134e56
   - 5968573462fa
+  - 5bc075714a8b
   - f242ee103277
   tool_panel_section_id: rna_analysis
   tool_panel_section_label: RNA Analysis

usegalaxy.cz/text_manipulation.yml.lock

@@ -93,6 +93,7 @@ tools:
   revisions:
   - 3bf5661c0280
   - 56a8da1f2243
+  - 6fb9abd4a64a
   - c656214aa052
   - cd36d6e45e29
   tool_panel_section_id: text_manipulation
@@ -130,6 +131,7 @@ tools:
   owner: iuc
   revisions:
   - 3a6b78c39dca
+  - a8e9456dbead
   - cf34c344508d
   - cf4397560712
   tool_panel_section_id: text_manipulation

usegalaxy.cz/variant_calling.yml.lock

@@ -167,6 +167,7 @@ tools:
   - 09d6806c609e
   - 0abc5513f795
   - 2b3e65a4252f
+  - 2d6319686ea3
   - 2e497a770bca
   - 5fab4f81391d
   - b04635ebfab0
@@ -197,6 +198,7 @@ tools:
   revisions:
   - 14af3b671440
   - 4805fe3d8fda
+  - 72d76a5adbc9
   - b11e8e9c23bf
   - e1461b5c52a0
   tool_panel_section_id: variant_calling
@@ -263,6 +265,7 @@ tools:
   owner: iuc
   revisions:
   - 2a3a00c1fa0a
+  - b68ff9393fb6
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
 - name: lofreq_viterbi
@@ -271,6 +274,7 @@ tools:
   - 3330ebe7c0c7
   - aa35ee7f3ab2
   - af7e416d8176
+  - facfecd498e4
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
 - name: lofreq_alnqual
@@ -282,6 +286,7 @@ tools:
 - name: lofreq_indelqual
   owner: iuc
   revisions:
+  - 07cd2a0e530d
   - 354b534eeab7
   - 4165b712b569
   - 426d707dfc47
@@ -385,6 +390,7 @@ tools:
   owner: devteam
   revisions:
   - 166c4f50525f
+  - 2116f9563368
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
 - name: vcfbreakcreatemulti
@@ -445,6 +451,7 @@ tools:
 - name: vcfsort
   owner: devteam
   revisions:
+  - 851e0d4ed101
   - dd44c3f416c3
   - ee60203e68d9
   tool_panel_section_id: variant_calling

usegalaxy.cz/virology.yml.lock

@@ -8,6 +8,7 @@ tools:
   - 0893a1dbb807
   - 6606a8c97889
   - 7bd020da0ce5
+  - 8b20bc80ebf4
   - c092052ed673
   - f0cc9cf99407
   tool_panel_section_id: virology