diff --git a/usegalaxy.cz/annotation.yml.lock b/usegalaxy.cz/annotation.yml.lock index df21e13..38da728 100644 --- a/usegalaxy.cz/annotation.yml.lock +++ b/usegalaxy.cz/annotation.yml.lock @@ -362,6 +362,7 @@ tools: - 9bc5cdefb090 - 9cd341095afd - aff5135563c6 + - b6236eb1a50b tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: socru @@ -812,6 +813,7 @@ tools: owner: iuc revisions: - 1942e86e2ee1 + - 25f3b474ca6f - 292eea8defa7 - 728dacaf08a9 - d77802fe76f7 diff --git a/usegalaxy.cz/assembly.yml.lock b/usegalaxy.cz/assembly.yml.lock index 20d2fd2..05cdcd4 100644 --- a/usegalaxy.cz/assembly.yml.lock +++ b/usegalaxy.cz/assembly.yml.lock @@ -221,6 +221,7 @@ tools: - 02a822e32de7 - 14ddfc8ffb93 - 7518ee87b53d + - 792acb18fb24 - 98242353faa4 - ab208c87d973 - de387b2b2803 @@ -268,6 +269,7 @@ tools: - 1ce9b1d72ec3 - 276f5d8712d5 - 3ee0ef312022 + - 53d3fd8fca8d - 643e0ff70be5 - 8d4f03b5fe9d - cb8dfd28c16f @@ -289,6 +291,7 @@ tools: - 81df4950d65b - 875d0f36d66f - a3b35edea53a + - baeffe7bfe47 - cbc516cee202 - ebb0dcdb621a tool_panel_section_id: assembly diff --git a/usegalaxy.cz/convert_formats.yml.lock b/usegalaxy.cz/convert_formats.yml.lock index 00b3353..d64f98f 100644 --- a/usegalaxy.cz/convert_formats.yml.lock +++ b/usegalaxy.cz/convert_formats.yml.lock @@ -160,6 +160,7 @@ tools: - name: biom_convert owner: iuc revisions: + - 081cc9a9a738 - b3858ab7f598 - d4d4e9febf5c - e177a8ea0bf1 @@ -177,6 +178,7 @@ tools: revisions: - 154d00cbbf2d - 3e436657dcd0 + - 88fecd593368 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: msms_extractor @@ -201,6 +203,7 @@ tools: - 77f67ddd89d6 - 7e2ee5f43778 - ab55af10f1ff + - db7c0226ebd9 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: graphicsmagick_image_convert diff --git a/usegalaxy.cz/epigenetics.yml b/usegalaxy.cz/epigenetics.yml index f3f8b3b..8a3f4d9 100644 --- a/usegalaxy.cz/epigenetics.yml +++ b/usegalaxy.cz/epigenetics.yml @@ -42,3 +42,5 @@ tools: owner: lldelisle - name: hicup2juicer owner: bgruening +- name: atacseqqc + owner: iuc diff --git a/usegalaxy.cz/epigenetics.yml.lock b/usegalaxy.cz/epigenetics.yml.lock index 0f8ec01..115e668 100644 --- a/usegalaxy.cz/epigenetics.yml.lock +++ b/usegalaxy.cz/epigenetics.yml.lock @@ -156,3 +156,9 @@ tools: - f8cb84c49623 tool_panel_section_id: epigenetics tool_panel_section_label: Epigenetics +- name: atacseqqc + owner: iuc + revisions: + - e03e488e03e0 + tool_panel_section_id: epigenetics + tool_panel_section_label: Epigenetics diff --git a/usegalaxy.cz/fasta_fastq.yml.lock b/usegalaxy.cz/fasta_fastq.yml.lock index 1c810c2..3df38cb 100644 --- a/usegalaxy.cz/fasta_fastq.yml.lock +++ b/usegalaxy.cz/fasta_fastq.yml.lock @@ -66,6 +66,7 @@ tools: revisions: - 297962e79f39 - 4a3e93647a4e + - 5e0a8c02887c - ac3fed111eb6 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -94,6 +95,7 @@ tools: owner: devteam revisions: - '144275714590' + - 242f90a25c1d - 81a9090d6df3 - ff7d49ec777f tool_panel_section_id: fasta_fastq @@ -221,6 +223,7 @@ tools: owner: devteam revisions: - 516b97a23d7e + - 59a3ca730b16 - 859422bcb689 - e773f1eb16cf tool_panel_section_id: fasta_fastq @@ -240,6 +243,7 @@ tools: - 2bd7cdbb6228 - 53af7b5b1b56 - 75a3b8da8e76 + - 771554c05a0b - a60283899c6d - b9aaed85cbd1 - d94aff5ee623 @@ -356,6 +360,7 @@ tools: - 8511b6d85fc7 - a019807f4e67 - a09586d5149a + - c8fb17965c7d tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: umi_tools_group @@ -602,6 +607,7 @@ tools: - 24107542edff - 3d6d1121a427 - 54a954ee64d4 + - 812705bcf39c - a89d0059d1d7 - b9297580f1e0 - cfa0fe8978a3 @@ -675,6 +681,7 @@ tools: revisions: - 1ee282794de3 - 654b3a274ed5 + - dbd2e239117c tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ - name: seqkit_translate diff --git a/usegalaxy.cz/graph_display_data.yml.lock b/usegalaxy.cz/graph_display_data.yml.lock index 814b984..d35323a 100644 --- a/usegalaxy.cz/graph_display_data.yml.lock +++ b/usegalaxy.cz/graph_display_data.yml.lock @@ -68,6 +68,7 @@ tools: revisions: - 1483285bdb7a - a6e57ff585c0 + - eb55da80c5e2 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data - name: circos @@ -132,6 +133,7 @@ tools: - name: taxonomy_krona_chart owner: crs4 revisions: + - 01a54504b6aa - 1334cb4c6b68 - 73486cc6170e - 7d01da0b9e18 diff --git a/usegalaxy.cz/join__subtract_and_group.yml.lock b/usegalaxy.cz/join__subtract_and_group.yml.lock index 5edd1d5..15738c4 100644 --- a/usegalaxy.cz/join__subtract_and_group.yml.lock +++ b/usegalaxy.cz/join__subtract_and_group.yml.lock @@ -16,6 +16,7 @@ tools: owner: iuc revisions: - 3ddd99c7efee + - 4b00d89e8690 tool_panel_section_id: join__subtract_and_group tool_panel_section_label: Join, Subtract and Group - name: subtract diff --git a/usegalaxy.cz/mapping.yml.lock b/usegalaxy.cz/mapping.yml.lock index 5c1d8a9..9edb500 100644 --- a/usegalaxy.cz/mapping.yml.lock +++ b/usegalaxy.cz/mapping.yml.lock @@ -75,6 +75,7 @@ tools: revisions: - 53255f6eecfc - 55c9ac3aa8f4 + - 6e8618432bea - 79de45b5069b - 980d2a2e1180 - d8d32326fbfb @@ -152,6 +153,7 @@ tools: revisions: - 1dfc975b48d5 - 2477830927ec + - 2e9f2d3d1b39 - 4a196b9c72c2 - 64f11cf59c6e - c598cbb8b019 diff --git a/usegalaxy.cz/metagenomic_analysis.yml b/usegalaxy.cz/metagenomic_analysis.yml index 8f60271..4767816 100644 --- a/usegalaxy.cz/metagenomic_analysis.yml +++ b/usegalaxy.cz/metagenomic_analysis.yml @@ -378,3 +378,9 @@ tools: owner: iuc - name: phyloseq_tax_glom owner: iuc +- name: kneaddata + owner: iuc +- name: motus + owner: bgruening +- name: samestr + owner: iuc diff --git a/usegalaxy.cz/metagenomic_analysis.yml.lock b/usegalaxy.cz/metagenomic_analysis.yml.lock index 4ae7aba..b2947fd 100644 --- a/usegalaxy.cz/metagenomic_analysis.yml.lock +++ b/usegalaxy.cz/metagenomic_analysis.yml.lock @@ -674,6 +674,7 @@ tools: - name: krakentools_extract_kraken_reads owner: iuc revisions: + - 04eb022d7409 - 3b1963f729cb - 4bf1e2701504 - f329328da134 @@ -1641,3 +1642,21 @@ tools: - bcc827195b65 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis +- name: kneaddata + owner: iuc + revisions: + - 10f8abc1fbdf + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: motus + owner: bgruening + revisions: + - b2b7a3897ef6 + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: samestr + owner: iuc + revisions: + - 66378faa1313 + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis diff --git a/usegalaxy.cz/ncbi_blast.yml.lock b/usegalaxy.cz/ncbi_blast.yml.lock index f1f1493..7310957 100644 --- a/usegalaxy.cz/ncbi_blast.yml.lock +++ b/usegalaxy.cz/ncbi_blast.yml.lock @@ -14,6 +14,7 @@ tools: - 6560192c5098 - 6f386c5dc4fb - 70e7dcbf6573 + - 71a9b71a2fa1 - 7538e2bfcd41 - 7f3c448e119b - 9dabbfd73c8a diff --git a/usegalaxy.cz/peak_calling.yml.lock b/usegalaxy.cz/peak_calling.yml.lock index bf95d5a..2fcb0b8 100644 --- a/usegalaxy.cz/peak_calling.yml.lock +++ b/usegalaxy.cz/peak_calling.yml.lock @@ -38,6 +38,7 @@ tools: revisions: - 640d3af5d833 - 86e2413cf3f8 + - d8362a868940 tool_panel_section_id: peak_calling tool_panel_section_label: Peak Calling - name: peakachu diff --git a/usegalaxy.cz/picard.yml.lock b/usegalaxy.cz/picard.yml.lock index bf2b03a..2146b88 100644 --- a/usegalaxy.cz/picard.yml.lock +++ b/usegalaxy.cz/picard.yml.lock @@ -10,6 +10,7 @@ tools: - 3f254c5ced1d - 585027e65f3b - 881d7645d1bf + - 933d5b76e8e8 - a1f0b3f4b781 - b502c227b5e6 - bdd173c2d3e3 diff --git a/usegalaxy.cz/quality_control.yml.lock b/usegalaxy.cz/quality_control.yml.lock index 88f4a0a..47c48c7 100644 --- a/usegalaxy.cz/quality_control.yml.lock +++ b/usegalaxy.cz/quality_control.yml.lock @@ -15,6 +15,7 @@ tools: - 5e33b465d8d5 - 75c93c70d094 - 862943c10425 + - 94b6bea727ae - 97255f6fdf7e - 9a913cdee30e - a7e081ceb76a diff --git a/usegalaxy.cz/rna_analysis.yml.lock b/usegalaxy.cz/rna_analysis.yml.lock index d4c1117..834708f 100644 --- a/usegalaxy.cz/rna_analysis.yml.lock +++ b/usegalaxy.cz/rna_analysis.yml.lock @@ -582,6 +582,7 @@ tools: - 2e6190c29c54 - 473382134e56 - 5968573462fa + - 5bc075714a8b - f242ee103277 tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis diff --git a/usegalaxy.cz/text_manipulation.yml.lock b/usegalaxy.cz/text_manipulation.yml.lock index db7d72c..5ced77c 100644 --- a/usegalaxy.cz/text_manipulation.yml.lock +++ b/usegalaxy.cz/text_manipulation.yml.lock @@ -93,6 +93,7 @@ tools: revisions: - 3bf5661c0280 - 56a8da1f2243 + - 6fb9abd4a64a - c656214aa052 - cd36d6e45e29 tool_panel_section_id: text_manipulation @@ -130,6 +131,7 @@ tools: owner: iuc revisions: - 3a6b78c39dca + - a8e9456dbead - cf34c344508d - cf4397560712 tool_panel_section_id: text_manipulation diff --git a/usegalaxy.cz/variant_calling.yml.lock b/usegalaxy.cz/variant_calling.yml.lock index 0907bf5..6dfd046 100644 --- a/usegalaxy.cz/variant_calling.yml.lock +++ b/usegalaxy.cz/variant_calling.yml.lock @@ -167,6 +167,7 @@ tools: - 09d6806c609e - 0abc5513f795 - 2b3e65a4252f + - 2d6319686ea3 - 2e497a770bca - 5fab4f81391d - b04635ebfab0 @@ -197,6 +198,7 @@ tools: revisions: - 14af3b671440 - 4805fe3d8fda + - 72d76a5adbc9 - b11e8e9c23bf - e1461b5c52a0 tool_panel_section_id: variant_calling @@ -263,6 +265,7 @@ tools: owner: iuc revisions: - 2a3a00c1fa0a + - b68ff9393fb6 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: lofreq_viterbi @@ -271,6 +274,7 @@ tools: - 3330ebe7c0c7 - aa35ee7f3ab2 - af7e416d8176 + - facfecd498e4 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: lofreq_alnqual @@ -282,6 +286,7 @@ tools: - name: lofreq_indelqual owner: iuc revisions: + - 07cd2a0e530d - 354b534eeab7 - 4165b712b569 - 426d707dfc47 @@ -385,6 +390,7 @@ tools: owner: devteam revisions: - 166c4f50525f + - 2116f9563368 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: vcfbreakcreatemulti @@ -445,6 +451,7 @@ tools: - name: vcfsort owner: devteam revisions: + - 851e0d4ed101 - dd44c3f416c3 - ee60203e68d9 tool_panel_section_id: variant_calling diff --git a/usegalaxy.cz/virology.yml.lock b/usegalaxy.cz/virology.yml.lock index 97d5913..9d19cca 100644 --- a/usegalaxy.cz/virology.yml.lock +++ b/usegalaxy.cz/virology.yml.lock @@ -8,6 +8,7 @@ tools: - 0893a1dbb807 - 6606a8c97889 - 7bd020da0ce5 + - 8b20bc80ebf4 - c092052ed673 - f0cc9cf99407 tool_panel_section_id: virology